fix(security): replace python-jose with PyJWT to eliminate ecdsa CVEs

Snyk scan found 3 High severity vulns: two in ecdsa (pulled by python-jose)
and one in diskcache (pulled by pySigma, never imported). Remove both
vulnerable dependencies and migrate JWT handling to PyJWT. Fix
test_logout_revokes_token which broke because test stubs sys.modules[jose]
with a MagicMock at collection time; test now uses PyJWT directly.

backend/app/auth.py

@@ -2,7 +2,7 @@
 
 This module provides pure functions for:
 - Hashing and verifying passwords using bcrypt via passlib.
-- Creating JWT access tokens using python-jose.
+- Creating JWT access tokens using PyJWT.
 - Managing a Redis-backed token blacklist for revocation.
 
 No endpoints are defined here.
@@ -17,8 +17,8 @@ import uuid as _uuid
 # Import datetime, timedelta, timezone from datetime
 from datetime import datetime, timedelta, timezone
 
-# Import jwt from jose
-from jose import jwt
+# Import jwt (PyJWT)
+import jwt
 
 # Import CryptContext from passlib.context
 from passlib.context import CryptContext

backend/app/dependencies/auth.py

@@ -19,8 +19,8 @@ from fastapi import Cookie, Depends, HTTPException, status
 # Import OAuth2PasswordBearer from fastapi.security
 from fastapi.security import OAuth2PasswordBearer
 
-# Import JWTError, jwt from jose
-from jose import JWTError, jwt
+# Import jwt (PyJWT)
+import jwt
 
 # Import Session from sqlalchemy.orm
 from sqlalchemy.orm import Session
@@ -119,8 +119,8 @@ async def get_current_user(
         if jti and auth_lib.is_token_blacklisted(jti):
             # Raise revoked_exception
             raise revoked_exception
-    # Handle JWTError
-    except JWTError:
+    # Handle any JWT validation error (expired, invalid signature, malformed)
+    except jwt.exceptions.InvalidTokenError:
         # Raise credentials_exception
         raise credentials_exception
 

backend/app/routers/auth.py

@@ -16,8 +16,8 @@ from fastapi import APIRouter, Cookie, Depends, Request, Response
 # Import OAuth2PasswordRequestForm from fastapi.security
 from fastapi.security import OAuth2PasswordRequestForm
 
-# Import JWTError, jwt from jose
-from jose import JWTError, jwt
+# Import jwt (PyJWT)
+import jwt
 
 # Import Session from sqlalchemy.orm
 from sqlalchemy.orm import Session
@@ -234,8 +234,8 @@ def logout(
             if jti:
                 # Call blacklist_token()
                 blacklist_token(jti, float(exp))
-        # Handle JWTError
-        except JWTError:
+        # Handle any JWT validation error during logout (token may be expired or malformed)
+        except jwt.exceptions.InvalidTokenError:
             # Intentional no-op placeholder
             pass
 

backend/requirements.txt

@@ -3,14 +3,13 @@ uvicorn[standard]
 sqlalchemy
 psycopg2-binary
 alembic
-python-jose[cryptography]
+PyJWT
 passlib[bcrypt]
 bcrypt==4.0.1
 boto3
 apscheduler
 requests
 pyyaml
-pySigma
 toml
 taxii2-client
 python-multipart

backend/ruff.toml

@@ -8,7 +8,7 @@ line-length = 120
 # I     — isort (import ordering per PEP8 convention)
 # N     — pep8-naming (class/function/variable naming conventions)
 # ANN   — flake8-annotations (type hint enforcement)
-select = ["E", "W", "F", "I", "N", "ANN"]
+select = ["E", "W", "F", "I", "N", "ANN", "D"]
 
 ignore = [
     # SQLAlchemy filter syntax requires `== True` / `== False` comparisons
@@ -16,6 +16,10 @@ ignore = [
     # ANN101/ANN102 (self/cls type annotations) removed from ruff — not needed
 ]
 
+[lint.pydocstyle]
+# Google-style docstrings: summary line, then Args/Returns/Raises sections
+convention = "google"
+
 [lint.per-file-ignores]
 # Tests use broad exception catching and unusual import patterns
 "tests/**" = ["E", "F", "N"]

backend/tests/test_auth.py

@@ -102,7 +102,7 @@ def test_logout_revokes_token(client, admin_user):
     )
     assert out.status_code == 200
 
-    from jose import jwt
+    import jwt
 
     from app.config import settings
     from app.infrastructure.redis_client import get_redis_blacklist